PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc07122.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 247aa    MW: 26299.7 Da    PI: 5.9184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc07122.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-18250355
                           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Zpz_sc07122.1.g00010.1.am.mk  2 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 50
                                  56******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.29E-26157No hitNo description
PROSITE profilePS5103220.547158IPR001471AP2/ERF domain
SMARTSM003807.5E-30164IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-20259IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-28258IPR001471AP2/ERF domain
PRINTSPR003677.4E-8213IPR001471AP2/ERF domain
PfamPF008471.8E-11450IPR001471AP2/ERF domain
PRINTSPR003677.4E-82440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
RFLGVRRRPW GRYAAEIRDP TTKERHWLGT FDTAQEAALA YDRAALSMKG AQARTNFVYS  60
HTAYNYPPFL APFHAQPSYG YAQSSMHQYG GQHGMGASSH IGSYHPHYQA PAGSGASSAS  120
GECSMPVAVD RADGSLLDGG HNFLFSSADD NSGYLSSVVP ESCLRPRSSA AAAEDMRRYS  180
DADAYGMMGL REDVDDLAQM VAGFWGDAGD AEQLGACAFP AGGGHGGDIV SSSQGSDAYS  240
PFSFLSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17257662ATERF1
3gcc_A1e-17257662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0363651e-101BT036365.1 Zea mays full-length cDNA clone ZM_BFb0108M21 mRNA, complete cds.
GenBankKJ7275471e-101KJ727547.1 Zea mays clone pUT5407 AP2-EREBP transcription factor (EREB151) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958652.11e-118PREDICTED: ethylene-responsive transcription factor ERF086
SwissprotQ6J9Q21e-41ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLK4A1M71e-118K4A1M7_SETIT; Uncharacterized protein
STRINGSi032771m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-41ERF family protein